The data in: phiX_tst1_rd_srt.bex
was analyzed on the ../Genome/NC_001422_phiX.gb.fa sequence
and the annotations in ../Genome/NC_001422_phiX.gb.cds
at 09-11-2011; 16:31:23
Program: ../../R2R_Analyzer.pl
Mut/InDels in repeat regions are not reported since the variable $no_mut_in_repeats = 'y' is set
Min number of InDel reads to report: 4
Min number of Mutation reads to report: 4
Min frequency of mut reads cmp to matching reads: 1
Min overlap between two consecutive reads to confirm overlapping sequence reads: 7
Min distance for printing & analysing reads; 0 prints all reads: 1
panel_No P_Pos Mut/InDel #Mut #Mut+ #Mut- #Match ID_qual Repeat SNP? Suggested mutation(s) Annotation(s)
panel: 0 587 Mutation: 173 122 51 0 g>a (1.00) V>V; W>*; (major transcript) (minor transcript) (D) (E)
panel: 0 833 Mutation: 146 50 96 0 g>a (1.00) A>A; R>Q; (major transcript) (minor transcript) (D) (E)
panel: 2 731 Mutation: 104 80 24 0 a>g (1.00) N>D; (major transcript) (G)
panel: 2 793 Mutation: 154 106 48 0 c>t (1.00) P>P; (major transcript) (G)
panel: 2 811 Mutation: 132 95 37 0 c>t (1.00) N>N; (major transcript) (G)
panel: 3 132 Mutation: 26 18 8 22 g>a (0.92) A>T; (major transcript) (H)
panel: 4 999 InDel: 39 39 0 32 1.45 (A) (A* /protein_id=)